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Below are the 20 most recent journal entries recorded in Andrew's LiveJournal:

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    Tuesday, May 12th, 2009
    9:41 pm
    Fascinating *raises eyebrows*
    Your results:
    You are Spock
    Spock
    69%
    James T. Kirk (Captain)
    65%
    Geordi LaForge
    65%
    Deanna Troi
    65%
    An Expendable Character (Redshirt)
    60%
    Leonard McCoy (Bones)
    55%
    Mr. Scott
    55%
    Uhura
    55%
    Jean-Luc Picard
    55%
    Will Riker
    55%
    Data
    53%
    Beverly Crusher
    50%
    Mr. Sulu
    45%
    Chekov
    40%
    Worf
    40%
    You are skilled in knowledge and logic.
    You believe that the needs of the many
    outweigh the needs of the few.


    Click here to take the Star Trek Personality Quiz

    Wednesday, November 12th, 2008
    8:44 pm
    Random
    I have one final class to take before I am done with classes (I haven't taken a class in 6 months). It's Plant Diversity and Evolution and is my first biology class. Right now we are looking at ferns and evolution of ferns into land plants.

    While doing my homework, I had a crippling thought. In Fern Gully most of the emphasis is placed on seeds and helping seeds grow as the mechanism for eliminating evil (or, less ambitiously, long-chain hydrocarbons). However, the major innovation between ferns and higher plants is the development of seeds. Ferns don't have seeds but the movie is still called Fern Gully. HELP! The cherished memories of my childhood DON'T ACTUALLY MAKE ANY SENSE!!!

    Yeah, I really should finish this so I can get back to doing real science... sigh.
    Monday, June 30th, 2008
    6:19 pm
    Sometimes
    It's amazing that something as simple as a comic panel can get such a complicated subject so perfectly

    (What I'm talking about)
    Thursday, March 6th, 2008
    1:04 pm
    PS
    Someday, when I have... time. I am totally going to translate the hell out of that Latin passage that pops up when you go to post a picture
    12:56 pm
    Wednesday, January 30th, 2008
    10:39 pm

    A mathematician is interviewing for a prestigious job. To make sure he has the right morals, the interviewer gives him the following situation:

    "You're late for a meeting, when you come across a burning house, a fire hydrant, and a fire hose lying across the street. What do you do?"

    The mathematician responds:

    "People's lives are more important than the meeting. I screw the fire hose into the hydrant and put out the fire before coming to the office."

    The interviewer is impressed, but asks him a followup question just to make sure:

    "You're late for a meeting when you pass a fire hose connected to a hydrant, next to a perfectly safe house. What do you do?"

    The mathematician thinks for a moment, then replies:

    "I unscrew the fire hose, carry it across the street, and set the house on fire. Then I've reduced it to a problem I've already solved."

    Tuesday, January 29th, 2008
    2:10 am
    Gaze across the rainy streets to
    England called, they want their weather back.

    (Went skiing this weekend. Had fun, didn't die).
    Friday, January 4th, 2008
    8:21 pm
    Sunshine State
    Wow, the weather today was crazy. Winds had to be something like 60-70 mph. Made me feel like home during hurricane season.

    (On the plus side, it's not worse than 50 degrees outside now).
    Sunday, December 23rd, 2007
    9:36 pm
    I am (Figure 1.) Legend
    Ok, so I saw "I am Legend" in which the protagonist:

    Has been working for 3 years on what is apparently a high-throughput chemical screen in a lab in some basement, without any success
    Only talks to mannequins
    Never goes out at night
    Only ever eats canned food
    Is surrounded by a bunch of mindless zombies
    And teeters on the brink of insanity

    Ok, who in the world decided to write a movie based on a graduate student?
    Sunday, December 9th, 2007
    10:51 pm
    Sometimes,

    these

    hit a little too

    close to home
    Monday, November 19th, 2007
    2:42 am
    Yes, but
    I've read a number of studies on mate selection in women being based on various attributes for fathering children. You know, the standard stuff: hook up with the alpha, marry the beta, change strategies when most fertile, blah blah. There was a study recently that women prefer men with more average ambition and earning than others (though more attractiveness is always preferred). The idea being that overly ambitious men might not put much effort into parenting, blah blah...

    My question is this: what about women who don't want children? Did the researchers consider that (i need to dig up the actual paper and read it). Is our mating psychology so hardwired that even our conscious decisions can't effect it  (on  a general level obviously). I'm really curious what the answer is.
    Wednesday, November 7th, 2007
    12:17 pm
    Left turn
    What? Virginia's state senate went democratic? Holy... moley.
    Thursday, November 1st, 2007
    8:54 pm
    Change of plans
    Oh wow, that sleep thing is hard. New plan: 6 times a day, 30 minute naps. If that doesn't work, go to 8 30 minute naps. Then bring down the number of naps to 4 gradually.
    Wednesday, October 31st, 2007
    3:06 am
    The Artist Formerly Known as R.E.M.
    For the past 2 days, I have been trying something called polyphasic sleep  . This involves sleeping in 30 minute increments 4 times a day. The goal is to force the body to be able to reach a full REM cycle within those 30 minutes and "cut out" the deeper sleep phases. The adjustment is supposed to take about 2 weeks with varying reports about the miserableness of those 2 weeks. After that, you can go on 2 hours/day indefinitely.

    I have chosen 3:30 and 9:30 as my sleep times. So far, it's going ok. I think I am functioning at about 90 % of full capacity, and for more hours. The real difficulty is less feeling "tired" in the sense of being physically unable to stay awake, and more that I just really, really want to sleep. I think it's that the 30 minutes are enough to give me "rest" but without the REM not enough to give me "rejuvenation" if that makes any sense. Tasks that require substantial thought and planning are possible to do without error, but they require an incredible degree of willpower to do. As a result, my room is very clean and I am eating very well in an effort to put off mentally challenging work.

    I also don't get to sleep right away, something I hope I will adjust to as well. The sleep itself does not feel good. The first 5 minutes after waking up are horrible, afterwards I count the minutes until I get to take another nap. But supposing I can make it out of the 2 week period and supposing that all productive hours are lost (224), if 6 hours/day afterwards are saved, it will only take me 37 days to recover the time. And I think that's on the pessimistic side too.
    Sunday, October 28th, 2007
    1:38 pm
    LMNOP
    I can't stand heavily technical writing. If you can't explain your research to a lay person, at least on a conceptual level, you're doing something wrong. Journals should publish sister publications where the authors MUST submit a layperson-friendly version of the paper. This would prevent the mainstream media from butchering the science the way that they do. It would also be freely accessible, unlike most journals (which should also be open).

    However... I came across the following in an article on Moore's Law

    "Moore's Law is so perennially protean because its eponymous formulator never quite gave it a precise formulation. Rather, using prose, graphs, and a cartoon Moore wove together a collection of observations and insights in order to outline a cluster of trends that would change the way we live and work. In the main, Moore was right, and many of his specific predictions have come true over the years. The press, on the other hand, has met with mixed results in its attempts to sort out exactly what Moore said and, more importantly, what he meant. The present article represents my humble attempt to bring some order to the chaos of almost four decades of reporting and misreporting on an unbelievably complex industrial/social/psychological phenomenon."

    This paragraph is the sovereign of bombastic verbiage. However, none of the verbiage is truly extraneous. (Ok, I've had my fun, I'll be serious now).

    That paragraph is ridiculous, but reading through it, I think it sounds very pretty. I don't like the snobbishness of the tone (and anytime someone writes "my humble attempt to bring some order to chaos" and at the same time "perennially protean because its eponymous formulator" they're just being a dick, and not a humble one).

    In terms of informing someone, it does a bad job. But this is pretty close to poetry for an article on a CS trend. Of course, on the other hand, you could just read a poem instead... Anyway, I laughed for awhile. I just pray that section was written as satire, but I guess I can't recognize that very well either. Steven Colbert for President 2008.
    Sunday, October 21st, 2007
    7:42 pm
    One Trick Pony
    "Cheney said the ultimate goal of the Iranian leadership is to establish itself as the hegemonic force in the Middle East and undermine a free Shiite-majority Iraq as a rival for influence in the Muslim world."

    Hm... I wonder what having a hegemonic force in the Middle East would be like... that sounds bad.
    Saturday, October 6th, 2007
    12:35 pm
    Biocore
    Hardcore refers to a hiphop style. At Stanford, the set of required courses is called the "Biocore" I think Biocore would be the appropriate genre for this song. To those who haven't heard it, "Remember the Name" is really catchy good rap song, without any violence or misogyny that some rap songs have. It also has incredible instrumentals, and as soon as I heard the chorus, I knew I had to rewrite the song. The original lyrics are here. You can sing this version over the instrumental version word for word. I think it turns out well.

    For those of you who want to know what we're all about (in Biology)
    It's like this, yo.

    This is ten percent math
    Twenty percent genetics
    Fifteen percent concentrated bioinformatics
    Five percent physics
    Fifty percent nature
    And a hundred percent reason to recall the nomenclature

    He doesn't mind working through the night
    He just wants to do research whether it's at the bench or the mic-
    roscope, he works so hard he's often in the lab, alone
    In spite of the fact some people think his problem is known
    But fuck em, He knows the code
    It's not all about the DNA, it's all about the RNA and makin some protein
    Writin the story - Making sure the paper gets up
    That means when he puts it down Nature's picking it up.

    What is his thesis anyway?
    People don't think of it much
    Thought his project was absurd, now he's leaving them starstruck
    Taking all opportunities given despite the fact
    Cause they don't know his name, they don't read past the abstract
    Pull all his data together, now the picture connects
    He collaborates and helps, and now he's got his respect
    The cover of science he wrote, his graduate audition
    Straight out of school's he's got a Stanford faculty position

    This is twenty percent smart
    Eighty percent skill, a hundred percent will, to him its an art
    Who'd have thought he'd be the one upstagin all the big name
    No matter what field he gets into the result is always the same
    Met a creationist pinhead, took him to church
    Was like dude why you got the stupid biblical verse
    This dude is the truth, his lab is the place to be
    His fame's through the roof, he got a strip in XKCD

    This is ten percent math
    Twenty percent genetics
    Fifteen percent concentrated bioinformatics
    Five percent physics
    Fifty percent nature
    And a hundred percent reason to recall the nomenclature

    His new lab is so slick
    The other profs went on stike
    Tool of the system he's not
    to all the money it's a shock
    He's an open-source scientist
    He's a maverick, called the doc
    The type foundations want to work with and pharma plans to get shot
    Eight years in the making, patiently waiting to blow
    Now his GM organism is transforming the globe
    He's got a postdoc wih him, his stuff is equally rad
    You won't believe the kind of shit that comes out of this kid's lab

    He's not your average guy using blast
    Finds out genes crazy fast
    Always leaving you in last
    He gives all his genes crazy names
    People keep askin him, do they honor a person, do they stand for an acronym
    The competition needs a coup, they think they've regrouped
    He's got them taken faster than you can say that you got scooped
    Him and his crew are known around as one of the best
    Dedicated to what they do, they give a hundred percent.

    His students, nobody really knows how or why, they work so hard
    It seems like they never got time
    Because when you find a mutant, they already got nine
    And I've been to lab meeting, when that light goes on in his mind
    It's like a design it's written in his head every time
    Before he even touches a pipette or publishes a find
    And the students he advises, all the fields they combine
    Ridiculous, without even trying, how do they do it.

    This is ten percent math
    Twenty percent genetics
    Fifteen percent concentrated bioinformatics
    Five percent physics
    Fifty percent nature
    And a hundred percent reason to recall the nomenclature
    Tuesday, September 25th, 2007
    2:14 pm
    The PNAS Mightier
    Not much to say, but I'm pretty happy about the way my paper turned out.

    Plant biology has the top of the pubmed list search for Carroll A[author], until the next Carroll A publishes, which should take about... 3 days.
    Sunday, September 16th, 2007
    1:38 am
    Waves on the sea
    The more I think about reincarnation, the more I love the idea. It's bittersweet, elegant, and easy to code.

    While(Universe == 1){
        if(you == 0){
           you = 1;
           nlives++;
        }
    }

    Of course, God wrote in LISP instead, just to mess with us...
    Tuesday, August 7th, 2007
    8:20 am
    Californication
    Jonathan is visiting for the week. Yesterday we went with a couple people to Monterey. During the drive back, the topic of wikipedia's benefits and shortcomings came up. I tried to illustrate the inflated language self-important wikipedia editors gave certain articles by recalling an article I had read that stated that the entry on porn star Oliver North had a discussion section on his penis length that was longer than the average article on a nobel prize winner.

    To which Jonathan replied:

    I don't think you mean Oliver North, wasn't he the point man in the Iran Contra affair
    ...
    oh yeah
    ... [long pause]

    I think you mean Peter North.

    The people in the car have not stopped laughing since.
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